MULTIPLE FACTOR ANALYSIS BY EXAMPLE USING R CHAPMAN HALL CRC THE R SERIES

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Author : Jérôme Pagès
ISBN : 9781482205473
Genre : Mathematics
File Size : 54.3 MB
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Multiple factor analysis (MFA) enables users to analyze tables of individuals and variables in which the variables are structured into quantitative, qualitative, or mixed groups. Written by the co-developer of this methodology, Multiple Factor Analysis by Example Using R brings together the theoretical and methodological aspects of MFA. It also includes examples of applications and details of how to implement MFA using an R package (FactoMineR). The first two chapters cover the basic factorial analysis methods of principal component analysis (PCA) and multiple correspondence analysis (MCA). The next chapter discusses factor analysis for mixed data (FAMD), a little-known method for simultaneously analyzing quantitative and qualitative variables without group distinction. Focusing on MFA, subsequent chapters examine the key points of MFA in the context of quantitative variables as well as qualitative and mixed data. The author also compares MFA and Procrustes analysis and presents a natural extension of MFA: hierarchical MFA (HMFA). The final chapter explores several elements of matrix calculation and metric spaces used in the book.

Textual Statistics with R comprehensively covers the main multidimensional methods in textual statistics supported by a specially-written package in R. Methods discussed include correspondence analysis, clustering, and multiple factor analysis for contigency tables. Each method is illuminated by applications. The book is aimed at researchers and students in statistics, social sciences, hiistory, literature and linguistics. The book will be of interest to anyone from practitioners needing to extract information from texts to students in the field of massive data, where the ability to process textual data is becoming essential.

Author : Sebastien Le
ISBN : 9781466565739
Genre : Mathematics
File Size : 43.37 MB
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Choose the Proper Statistical Method for Your Sensory Data Issue Analyzing Sensory Data with R gives you the foundation to analyze and interpret sensory data. The book helps you find the most appropriate statistical method to tackle your sensory data issue. Covering quantitative, qualitative, and affective approaches, the book presents the big picture of sensory evaluation. Through an integrated approach that connects the different dimensions of sensory evaluation, you’ll understand: The reasons why sensory data are collected The ways in which the data are collected and analyzed The intrinsic meaning of the data The interpretation of the data analysis results Each chapter corresponds to one main sensory topic. The chapters start with presenting the nature of the sensory evaluation and its objectives, the sensory particularities related to the sensory evaluation, details about the data set obtained, and the statistical analyses required. Using real examples, the authors then illustrate step by step how the analyses are performed in R. The chapters conclude with variants and extensions of the methods that are related to the sensory task itself, the statistical methodology, or both.

Author : Julian J. Faraway
ISBN : 9780203507278
Genre : Mathematics
File Size : 41.52 MB
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Books on regression and the analysis of variance abound—many are introductory, many are theoretical. While most of them do serve a purpose, the fact remains that data analysis cannot be properly learned without actually doing it, and this means using a statistical software package. There are many of these to choose from, all with their particular strengths and weaknesses. Lately, however, one such package has begun to rise above the others thanks to its free availability, its versatility as a programming language, and its interactivity. That software is R. In the first book that directly uses R to teach data analysis, Linear Models with R focuses on the practice of regression and analysis of variance. It clearly demonstrates the different methods available and, more importantly, in which situations each one applies. It covers all of the standard topics, from the basics of estimation to missing data, factorial designs, and block designs. It also discusses topics, such as model uncertainty, rarely addressed in books of this type. The presentation incorporates numerous examples that clarify both the use of each technique and the conclusions one can draw from the results. All of the data sets used in the book are available for download from http://people.bath.ac.uk/jjf23/LMR/ The author assumes that readers know the essentials of statistical inference and have a basic knowledge of data analysis, linear algebra, and calculus. The treatment reflects his view of statistical theory and his belief that qualitative statistical concepts, while somewhat more difficult to learn, are just as important because they enable us to practice statistics rather than just talk about it.

Author : Murray Logan
ISBN : STANFORD:36105215484085
Genre : Computers
File Size : 59.80 MB
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R — the statistical and graphical environment is rapidly emerging as an important set of teaching and research tools for biologists. This book draws upon the popularity and free availability of R to couple the theory and practice of biostatistics into a single treatment, so as to provide a textbook for biologists learning statistics, R, or both. An abridged description of biostatistical principles and analysis sequence keys are combined together with worked examples of the practical use of R into a complete practical guide to designing and analyzing real biological research. Topics covered include: simple hypothesis testing, graphing exploratory data analysis and graphical summaries regression (linear, multi and non-linear) simple and complex ANOVA and ANCOVA designs (including nested, factorial, blocking, spit-plot and repeated measures) frequency analysis and generalized linear models. Linear mixed effects modeling is also incorporated extensively throughout as an alternative to traditional modeling techniques. The book is accompanied by a companion website www.wiley.com/go/logan/r with an extensive set of resources comprising all R scripts and data sets used in the book, additional worked examples, the biology package, and other instructional materials and links.

Author : Michael Greenacre
ISBN : 9781420011319
Genre : Mathematics
File Size : 58.42 MB
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As a generalization of simple correspondence analysis, multiple correspondence analysis (MCA) is a powerful technique for handling larger, more complex datasets, including the high-dimensional categorical data often encountered in the social sciences, marketing, health economics, and biomedical research. Until now, however, the literature on the subject has been scattered, leaving many in these fields no comprehensive resource from which to learn its theory, applications, and implementation. Multiple Correspondence Analysis and Related Methods gives a state-of-the-art description of this new field in an accessible, self-contained, textbook format. Explaining the methodology step-by-step, it offers an exhaustive survey of the different approaches taken by researchers from different statistical "schools" and explores a wide variety of application areas. Each chapter includes empirical examples that provide a practical understanding of the method and its interpretation, and most chapters end with a "Software Note" that discusses software and computational aspects. An appendix at the end of the book gives further computing details along with code written in the R language for performing MCA and related techniques. The code and the datasets used in the book are available for download from a supporting Web page. Providing a unique, multidisciplinary perspective, experts in MCA from both statistics and the social sciences contributed chapters to the book. The editors unified the notation and coordinated and cross-referenced the theory across all of the chapters, making the book read seamlessly. Practical, accessible, and thorough, Multiple Correspondence Analysis and Related Methods brings the theory and applications of MCA under one cover and provides a valuable addition to your statistical toolbox.

Richly illustrated in color, Statistics and Data Analysis for Microarrays Using R and Bioconductor, Second Edition provides a clear and rigorous description of powerful analysis techniques and algorithms for mining and interpreting biological information. Omitting tedious details, heavy formalisms, and cryptic notations, the text takes a hands-on, example-based approach that teaches students the basics of R and microarray technology as well as how to choose and apply the proper data analysis tool to specific problems. New to the Second Edition Completely updated and double the size of its predecessor, this timely second edition replaces the commercial software with the open source R and Bioconductor environments. Fourteen new chapters cover such topics as the basic mechanisms of the cell, reliability and reproducibility issues in DNA microarrays, basic statistics and linear models in R, experiment design, multiple comparisons, quality control, data pre-processing and normalization, Gene Ontology analysis, pathway analysis, and machine learning techniques. Methods are illustrated with toy examples and real data and the R code for all routines is available on an accompanying CD-ROM. With all the necessary prerequisites included, this best-selling book guides students from very basic notions to advanced analysis techniques in R and Bioconductor. The first half of the text presents an overview of microarrays and the statistical elements that form the building blocks of any data analysis. The second half introduces the techniques most commonly used in the analysis of microarray data.

Author : Daniel Mirman
ISBN : 9781315360331
Genre : Mathematics
File Size : 86.42 MB
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Learn How to Use Growth Curve Analysis with Your Time Course Data An increasingly prominent statistical tool in the behavioral sciences, multilevel regression offers a statistical framework for analyzing longitudinal or time course data. It also provides a way to quantify and analyze individual differences, such as developmental and neuropsychological, in the context of a model of the overall group effects. To harness the practical aspects of this useful tool, behavioral science researchers need a concise, accessible resource that explains how to implement these analysis methods. Growth Curve Analysis and Visualization Using R provides a practical, easy-to-understand guide to carrying out multilevel regression/growth curve analysis (GCA) of time course or longitudinal data in the behavioral sciences, particularly cognitive science, cognitive neuroscience, and psychology. With a minimum of statistical theory and technical jargon, the author focuses on the concrete issue of applying GCA to behavioral science data and individual differences. The book begins with discussing problems encountered when analyzing time course data, how to visualize time course data using the ggplot2 package, and how to format data for GCA and plotting. It then presents a conceptual overview of GCA and the core analysis syntax using the lme4 package and demonstrates how to plot model fits. The book describes how to deal with change over time that is not linear, how to structure random effects, how GCA and regression use categorical predictors, and how to conduct multiple simultaneous comparisons among different levels of a factor. It also compares the advantages and disadvantages of approaches to implementing logistic and quasi-logistic GCA and discusses how to use GCA to analyze individual differences as both fixed and random effects. The final chapter presents the code for all of the key examples along with samples demonstrating how to report GCA results. Throughout the book, R code illustrates how to implement the analyses and generate the graphs. Each chapter ends with exercises to test your understanding. The example datasets, code for solutions to the exercises, and supplemental code and examples are available on the author’s website.

This new version of the bestselling Computer-Aided Multivariate Analysis has been appropriately renamed to better characterize the nature of the book. Taking into account novel multivariate analyses as well as new options for many standard methods, Practical Multivariate Analysis, Fifth Edition shows readers how to perform multivariate statistical analyses and understand the results. For each of the techniques presented in this edition, the authors use the most recent software versions available and discuss the most modern ways of performing the analysis. New to the Fifth Edition Chapter on regression of correlated outcomes resulting from clustered or longitudinal samples Reorganization of the chapter on data analysis preparation to reflect current software packages Use of R statistical software Updated and reorganized references and summary tables Additional end-of-chapter problems and data sets The first part of the book provides examples of studies requiring multivariate analysis techniques; discusses characterizing data for analysis, computer programs, data entry, data management, data clean-up, missing values, and transformations; and presents a rough guide to assist in choosing the appropriate multivariate analysis. The second part examines outliers and diagnostics in simple linear regression and looks at how multiple linear regression is employed in practice and as a foundation for understanding a variety of concepts. The final part deals with the core of multivariate analysis, covering canonical correlation, discriminant, logistic regression, survival, principal components, factor, cluster, and log-linear analyses. While the text focuses on the use of R, S-PLUS, SAS, SPSS, Stata, and STATISTICA, other software packages can also be used since the output of most standard statistical programs is explained. Data sets and code are available for download from the book’s web page and CRC Press Online.

Author : W. Holmes Finch
ISBN : 9781466515857
Genre : Mathematics
File Size : 43.61 MB
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A powerful tool for analyzing nested designs in a variety of fields, multilevel/hierarchical modeling allows researchers to account for data collected at multiple levels. Multilevel Modeling Using R provides you with a helpful guide to conducting multilevel data modeling using the R software environment. After reviewing standard linear models, the authors present the basics of multilevel models and explain how to fit these models using R. They then show how to employ multilevel modeling with longitudinal data and demonstrate the valuable graphical options in R. The book also describes models for categorical dependent variables in both single level and multilevel data. The book concludes with Bayesian fitting of multilevel models. For those new to R, the appendix provides an introduction to this system that covers basic R knowledge necessary to run the models in the book. Through the R code and detailed explanations provided, this book gives you the tools to launch your own investigations in multilevel modeling and gain insight into your research.