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Multiple Factor Analysis By Example Using R

Author : Jérôme Pagès
ISBN : 9781498786690
Genre : Mathematics
File Size : 33.37 MB
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Multiple factor analysis (MFA) enables users to analyze tables of individuals and variables in which the variables are structured into quantitative, qualitative, or mixed groups. Written by the co-developer of this methodology, Multiple Factor Analysis by Example Using R brings together the theoretical and methodological aspects of MFA. It also includes examples of applications and details of how to implement MFA using an R package (FactoMineR). The first two chapters cover the basic factorial analysis methods of principal component analysis (PCA) and multiple correspondence analysis (MCA). The next chapter discusses factor analysis for mixed data (FAMD), a little-known method for simultaneously analyzing quantitative and qualitative variables without group distinction. Focusing on MFA, subsequent chapters examine the key points of MFA in the context of quantitative variables as well as qualitative and mixed data. The author also compares MFA and Procrustes analysis and presents a natural extension of MFA: hierarchical MFA (HMFA). The final chapter explores several elements of matrix calculation and metric spaces used in the book.
Category: Mathematics

Analyzing Sensory Data With R

Author : Sebastien Le
ISBN : 9781466565739
Genre : Mathematics
File Size : 56.3 MB
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Choose the Proper Statistical Method for Your Sensory Data Issue Analyzing Sensory Data with R gives you the foundation to analyze and interpret sensory data. The book helps you find the most appropriate statistical method to tackle your sensory data issue. Covering quantitative, qualitative, and affective approaches, the book presents the big picture of sensory evaluation. Through an integrated approach that connects the different dimensions of sensory evaluation, you’ll understand: The reasons why sensory data are collected The ways in which the data are collected and analyzed The intrinsic meaning of the data The interpretation of the data analysis results Each chapter corresponds to one main sensory topic. The chapters start with presenting the nature of the sensory evaluation and its objectives, the sensory particularities related to the sensory evaluation, details about the data set obtained, and the statistical analyses required. Using real examples, the authors then illustrate step by step how the analyses are performed in R. The chapters conclude with variants and extensions of the methods that are related to the sensory task itself, the statistical methodology, or both.
Category: Mathematics

Practical Guide To Principal Component Methods In R

Author : Alboukadel KASSAMBARA
ISBN : 9781975721138
Genre :
File Size : 37.19 MB
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Although there are several good books on principal component methods (PCMs) and related topics, we felt that many of them are either too theoretical or too advanced. This book provides a solid practical guidance to summarize, visualize and interpret the most important information in a large multivariate data sets, using principal component methods in R. The visualization is based on the factoextra R package that we developed for creating easily beautiful ggplot2-based graphs from the output of PCMs. This book contains 4 parts. Part I provides a quick introduction to R and presents the key features of FactoMineR and factoextra. Part II describes classical principal component methods to analyze data sets containing, predominantly, either continuous or categorical variables. These methods include: Principal Component Analysis (PCA, for continuous variables), simple correspondence analysis (CA, for large contingency tables formed by two categorical variables) and Multiple CA (MCA, for a data set with more than 2 categorical variables). In Part III, you'll learn advanced methods for analyzing a data set containing a mix of variables (continuous and categorical) structured or not into groups: Factor Analysis of Mixed Data (FAMD) and Multiple Factor Analysis (MFA). Part IV covers hierarchical clustering on principal components (HCPC), which is useful for performing clustering with a data set containing only categorical variables or with a mixed data of categorical and continuous variables.

Linear Models With R Second Edition

Author : Julian J. Faraway
ISBN : 9781439887349
Genre : Mathematics
File Size : 45.64 MB
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A Hands-On Way to Learning Data Analysis Part of the core of statistics, linear models are used to make predictions and explain the relationship between the response and the predictors. Understanding linear models is crucial to a broader competence in the practice of statistics. Linear Models with R, Second Edition explains how to use linear models in physical science, engineering, social science, and business applications. The book incorporates several improvements that reflect how the world of R has greatly expanded since the publication of the first edition. New to the Second Edition Reorganized material on interpreting linear models, which distinguishes the main applications of prediction and explanation and introduces elementary notions of causality Additional topics, including QR decomposition, splines, additive models, Lasso, multiple imputation, and false discovery rates Extensive use of the ggplot2 graphics package in addition to base graphics Like its widely praised, best-selling predecessor, this edition combines statistics and R to seamlessly give a coherent exposition of the practice of linear modeling. The text offers up-to-date insight on essential data analysis topics, from estimation, inference, and prediction to missing data, factorial models, and block designs. Numerous examples illustrate how to apply the different methods using R.
Category: Mathematics

Multiple Correspondence Analysis And Related Methods

Author : Michael Greenacre
ISBN : 9781420011319
Genre : Mathematics
File Size : 83.83 MB
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As a generalization of simple correspondence analysis, multiple correspondence analysis (MCA) is a powerful technique for handling larger, more complex datasets, including the high-dimensional categorical data often encountered in the social sciences, marketing, health economics, and biomedical research. Until now, however, the literature on the subject has been scattered, leaving many in these fields no comprehensive resource from which to learn its theory, applications, and implementation. Multiple Correspondence Analysis and Related Methods gives a state-of-the-art description of this new field in an accessible, self-contained, textbook format. Explaining the methodology step-by-step, it offers an exhaustive survey of the different approaches taken by researchers from different statistical "schools" and explores a wide variety of application areas. Each chapter includes empirical examples that provide a practical understanding of the method and its interpretation, and most chapters end with a "Software Note" that discusses software and computational aspects. An appendix at the end of the book gives further computing details along with code written in the R language for performing MCA and related techniques. The code and the datasets used in the book are available for download from a supporting Web page. Providing a unique, multidisciplinary perspective, experts in MCA from both statistics and the social sciences contributed chapters to the book. The editors unified the notation and coordinated and cross-referenced the theory across all of the chapters, making the book read seamlessly. Practical, accessible, and thorough, Multiple Correspondence Analysis and Related Methods brings the theory and applications of MCA under one cover and provides a valuable addition to your statistical toolbox.
Category: Mathematics

Growth Curve Analysis And Visualization Using R

Author : Daniel Mirman
ISBN : 9781315360331
Genre : Mathematics
File Size : 59.94 MB
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Learn How to Use Growth Curve Analysis with Your Time Course Data An increasingly prominent statistical tool in the behavioral sciences, multilevel regression offers a statistical framework for analyzing longitudinal or time course data. It also provides a way to quantify and analyze individual differences, such as developmental and neuropsychological, in the context of a model of the overall group effects. To harness the practical aspects of this useful tool, behavioral science researchers need a concise, accessible resource that explains how to implement these analysis methods. Growth Curve Analysis and Visualization Using R provides a practical, easy-to-understand guide to carrying out multilevel regression/growth curve analysis (GCA) of time course or longitudinal data in the behavioral sciences, particularly cognitive science, cognitive neuroscience, and psychology. With a minimum of statistical theory and technical jargon, the author focuses on the concrete issue of applying GCA to behavioral science data and individual differences. The book begins with discussing problems encountered when analyzing time course data, how to visualize time course data using the ggplot2 package, and how to format data for GCA and plotting. It then presents a conceptual overview of GCA and the core analysis syntax using the lme4 package and demonstrates how to plot model fits. The book describes how to deal with change over time that is not linear, how to structure random effects, how GCA and regression use categorical predictors, and how to conduct multiple simultaneous comparisons among different levels of a factor. It also compares the advantages and disadvantages of approaches to implementing logistic and quasi-logistic GCA and discusses how to use GCA to analyze individual differences as both fixed and random effects. The final chapter presents the code for all of the key examples along with samples demonstrating how to report GCA results. Throughout the book, R code illustrates how to implement the analyses and generate the graphs. Each chapter ends with exercises to test your understanding. The example datasets, code for solutions to the exercises, and supplemental code and examples are available on the author’s website.
Category: Mathematics

R F R Einsteiger

Author : Maike Luhmann
ISBN : 3621282491
Genre :
File Size : 46.27 MB
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Multilevel Modeling Using R

Author : W. Holmes Finch
ISBN : 9781466515857
Genre : Mathematics
File Size : 31.16 MB
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A powerful tool for analyzing nested designs in a variety of fields, multilevel/hierarchical modeling allows researchers to account for data collected at multiple levels. Multilevel Modeling Using R provides you with a helpful guide to conducting multilevel data modeling using the R software environment. After reviewing standard linear models, the authors present the basics of multilevel models and explain how to fit these models using R. They then show how to employ multilevel modeling with longitudinal data and demonstrate the valuable graphical options in R. The book also describes models for categorical dependent variables in both single level and multilevel data. The book concludes with Bayesian fitting of multilevel models. For those new to R, the appendix provides an introduction to this system that covers basic R knowledge necessary to run the models in the book. Through the R code and detailed explanations provided, this book gives you the tools to launch your own investigations in multilevel modeling and gain insight into your research.
Category: Mathematics

R In A Nutshell

Author : Joseph Adler
ISBN : 9783897216501
Genre : Computers
File Size : 41.38 MB
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Wozu sollte man R lernen? Da gibt es viele Gründe: Weil man damit natürlich ganz andere Möglichkeiten hat als mit einer Tabellenkalkulation wie Excel, aber auch mehr Spielraum als mit gängiger Statistiksoftware wie SPSS und SAS. Anders als bei diesen Programmen hat man nämlich direkten Zugriff auf dieselbe, vollwertige Programmiersprache, mit der die fertigen Analyse- und Visualisierungsmethoden realisiert sind – so lassen sich nahtlos eigene Algorithmen integrieren und komplexe Arbeitsabläufe realisieren. Und nicht zuletzt, weil R offen gegenüber beliebigen Datenquellen ist, von der einfachen Textdatei über binäre Fremdformate bis hin zu den ganz großen relationalen Datenbanken. Zudem ist R Open Source und erobert momentan von der universitären Welt aus die professionelle Statistik. R kann viel. Und Sie können viel mit R machen – wenn Sie wissen, wie es geht. Willkommen in der R-Welt: Installieren Sie R und stöbern Sie in Ihrem gut bestückten Werkzeugkasten: Sie haben eine Konsole und eine grafische Benutzeroberfläche, unzählige vordefinierte Analyse- und Visualisierungsoperationen – und Pakete, Pakete, Pakete. Für quasi jeden statistischen Anwendungsbereich können Sie sich aus dem reichen Schatz der R-Community bedienen. Sprechen Sie R! Sie müssen Syntax und Grammatik von R nicht lernen – wie im Auslandsurlaub kommen Sie auch hier gut mit ein paar aufgeschnappten Brocken aus. Aber es lohnt sich: Wenn Sie wissen, was es mit R-Objekten auf sich hat, wie Sie eigene Funktionen schreiben und Ihre eigenen Pakete schnüren, sind Sie bei der Analyse Ihrer Daten noch flexibler und effektiver. Datenanalyse und Statistik in der Praxis: Anhand unzähliger Beispiele aus Medizin, Wirtschaft, Sport und Bioinformatik lernen Sie, wie Sie Daten aufbereiten, mithilfe der Grafikfunktionen des lattice-Pakets darstellen, statistische Tests durchführen und Modelle anpassen. Danach werden Ihnen Ihre Daten nichts mehr verheimlichen.
Category: Computers

Statistics And Data Analysis For Microarrays Using R And Bioconductor Second Edition

Author : Sorin Drăghici
ISBN : 9781439809761
Genre : Science
File Size : 81.49 MB
Format : PDF, Kindle
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Richly illustrated in color, Statistics and Data Analysis for Microarrays Using R and Bioconductor, Second Edition provides a clear and rigorous description of powerful analysis techniques and algorithms for mining and interpreting biological information. Omitting tedious details, heavy formalisms, and cryptic notations, the text takes a hands-on, example-based approach that teaches students the basics of R and microarray technology as well as how to choose and apply the proper data analysis tool to specific problems. New to the Second Edition Completely updated and double the size of its predecessor, this timely second edition replaces the commercial software with the open source R and Bioconductor environments. Fourteen new chapters cover such topics as the basic mechanisms of the cell, reliability and reproducibility issues in DNA microarrays, basic statistics and linear models in R, experiment design, multiple comparisons, quality control, data pre-processing and normalization, Gene Ontology analysis, pathway analysis, and machine learning techniques. Methods are illustrated with toy examples and real data and the R code for all routines is available on an accompanying CD-ROM. With all the necessary prerequisites included, this best-selling book guides students from very basic notions to advanced analysis techniques in R and Bioconductor. The first half of the text presents an overview of microarrays and the statistical elements that form the building blocks of any data analysis. The second half introduces the techniques most commonly used in the analysis of microarray data.
Category: Science