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Handbook Of Markov Chain Monte Carlo

Author : Steve Brooks
ISBN : 9781420079425
Genre : Mathematics
File Size : 23.27 MB
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Since their popularization in the 1990s, Markov chain Monte Carlo (MCMC) methods have revolutionized statistical computing and have had an especially profound impact on the practice of Bayesian statistics. Furthermore, MCMC methods have enabled the development and use of intricate models in an astonishing array of disciplines as diverse as fisheries science and economics. The wide-ranging practical importance of MCMC has sparked an expansive and deep investigation into fundamental Markov chain theory. The Handbook of Markov Chain Monte Carlo provides a reference for the broad audience of developers and users of MCMC methodology interested in keeping up with cutting-edge theory and applications. The first half of the book covers MCMC foundations, methodology, and algorithms. The second half considers the use of MCMC in a variety of practical applications including in educational research, astrophysics, brain imaging, ecology, and sociology. The in-depth introductory section of the book allows graduate students and practicing scientists new to MCMC to become thoroughly acquainted with the basic theory, algorithms, and applications. The book supplies detailed examples and case studies of realistic scientific problems presenting the diversity of methods used by the wide-ranging MCMC community. Those familiar with MCMC methods will find this book a useful refresher of current theory and recent developments.
Category: Mathematics

Markov Chain Monte Carlo In Practice

Author : W.R. Gilks
ISBN : 0412055511
Genre : Mathematics
File Size : 49.97 MB
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In a family study of breast cancer, epidemiologists in Southern California increase the power for detecting a gene-environment interaction. In Gambia, a study helps a vaccination program reduce the incidence of Hepatitis B carriage. Archaeologists in Austria place a Bronze Age site in its true temporal location on the calendar scale. And in France, researchers map a rare disease with relatively little variation. Each of these studies applied Markov chain Monte Carlo methods to produce more accurate and inclusive results. General state-space Markov chain theory has seen several developments that have made it both more accessible and more powerful to the general statistician. Markov Chain Monte Carlo in Practice introduces MCMC methods and their applications, providing some theoretical background as well. The authors are researchers who have made key contributions in the recent development of MCMC methodology and its application. Considering the broad audience, the editors emphasize practice rather than theory, keeping the technical content to a minimum. The examples range from the simplest application, Gibbs sampling, to more complex applications. The first chapter contains enough information to allow the reader to start applying MCMC in a basic way. The following chapters cover main issues, important concepts and results, techniques for implementing MCMC, improving its performance, assessing model adequacy, choosing between models, and applications and their domains. Markov Chain Monte Carlo in Practice is a thorough, clear introduction to the methodology and applications of this simple idea with enormous potential. It shows the importance of MCMC in real applications, such as archaeology, astronomy, biostatistics, genetics, epidemiology, and image analysis, and provides an excellent base for MCMC to be applied to other fields as well.
Category: Mathematics

Markov Chain Monte Carlo

Author : Dani Gamerman
ISBN : 9781482296426
Genre : Mathematics
File Size : 23.96 MB
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While there have been few theoretical contributions on the Markov Chain Monte Carlo (MCMC) methods in the past decade, current understanding and application of MCMC to the solution of inference problems has increased by leaps and bounds. Incorporating changes in theory and highlighting new applications, Markov Chain Monte Carlo: Stochastic Simulation for Bayesian Inference, Second Edition presents a concise, accessible, and comprehensive introduction to the methods of this valuable simulation technique. The second edition includes access to an internet site that provides the code, written in R and WinBUGS, used in many of the previously existing and new examples and exercises. More importantly, the self-explanatory nature of the codes will enable modification of the inputs to the codes and variation on many directions will be available for further exploration. Major changes from the previous edition: · More examples with discussion of computational details in chapters on Gibbs sampling and Metropolis-Hastings algorithms · Recent developments in MCMC, including reversible jump, slice sampling, bridge sampling, path sampling, multiple-try, and delayed rejection · Discussion of computation using both R and WinBUGS · Additional exercises and selected solutions within the text, with all data sets and software available for download from the Web · Sections on spatial models and model adequacy The self-contained text units make MCMC accessible to scientists in other disciplines as well as statisticians. The book will appeal to everyone working with MCMC techniques, especially research and graduate statisticians and biostatisticians, and scientists handling data and formulating models. The book has been substantially reinforced as a first reading of material on MCMC and, consequently, as a textbook for modern Bayesian computation and Bayesian inference courses.
Category: Mathematics

Monte Carlo Strategies In Scientific Computing

Author : Jun S. Liu
ISBN : 9780387763712
Genre : Mathematics
File Size : 44.48 MB
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This book provides a self-contained and up-to-date treatment of the Monte Carlo method and develops a common framework under which various Monte Carlo techniques can be "standardized" and compared. Given the interdisciplinary nature of the topics and a moderate prerequisite for the reader, this book should be of interest to a broad audience of quantitative researchers such as computational biologists, computer scientists, econometricians, engineers, probabilists, and statisticians. It can also be used as a textbook for a graduate-level course on Monte Carlo methods.
Category: Mathematics

Analysis Of Incomplete Multivariate Data

Author : J.L. Schafer
ISBN : 1439821860
Genre : Mathematics
File Size : 72.6 MB
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The last two decades have seen enormous developments in statistical methods for incomplete data. The EM algorithm and its extensions, multiple imputation, and Markov Chain Monte Carlo provide a set of flexible and reliable tools from inference in large classes of missing-data problems. Yet, in practical terms, those developments have had surprisingly little impact on the way most data analysts handle missing values on a routine basis. Analysis of Incomplete Multivariate Data helps bridge the gap between theory and practice, making these missing-data tools accessible to a broad audience. It presents a unified, Bayesian approach to the analysis of incomplete multivariate data, covering datasets in which the variables are continuous, categorical, or both. The focus is applied, where necessary, to help readers thoroughly understand the statistical properties of those methods, and the behavior of the accompanying algorithms. All techniques are illustrated with real data examples, with extended discussion and practical advice. All of the algorithms described in this book have been implemented by the author for general use in the statistical languages S and S Plus. The software is available free of charge on the Internet.
Category: Mathematics

Handbook Of Mixed Membership Models And Their Applications

Author : Edoardo M. Airoldi
ISBN : 9781466504097
Genre : Computers
File Size : 37.9 MB
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In response to scientific needs for more diverse and structured explanations of statistical data, researchers have discovered how to model individual data points as belonging to multiple groups. Handbook of Mixed Membership Models and Their Applications shows you how to use these flexible modeling tools to uncover hidden patterns in modern high-dimensional multivariate data. It explores the use of the models in various application settings, including survey data, population genetics, text analysis, image processing and annotation, and molecular biology. Through examples using real data sets, you’ll discover how to characterize complex multivariate data in: Studies involving genetic databases Patterns in the progression of diseases and disabilities Combinations of topics covered by text documents Political ideology or electorate voting patterns Heterogeneous relationships in networks, and much more The handbook spans more than 20 years of the editors’ and contributors’ statistical work in the field. Top researchers compare partial and mixed membership models, explain how to interpret mixed membership, delve into factor analysis, and describe nonparametric mixed membership models. They also present extensions of the mixed membership model for text analysis, sequence and rank data, and network data as well as semi-supervised mixed membership models.
Category: Computers

Advanced Markov Chain Monte Carlo Methods

Author : Faming Liang
ISBN : 0470748265
Genre : Mathematics
File Size : 24.62 MB
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Markov Chain Monte Carlo (MCMC) methods are now an indispensable tool in scientific computing. This book discusses recent developments of MCMC methods with an emphasis on those making use of past sample information during simulations. The application examples are drawn from diverse fields such as bioinformatics, machine learning, social science, combinatorial optimization, and computational physics. Key Features: Expanded coverage of the stochastic approximation Monte Carlo and dynamic weighting algorithms that are essentially immune to local trap problems. A detailed discussion of the Monte Carlo Metropolis-Hastings algorithm that can be used for sampling from distributions with intractable normalizing constants. Up-to-date accounts of recent developments of the Gibbs sampler. Comprehensive overviews of the population-based MCMC algorithms and the MCMC algorithms with adaptive proposals. This book can be used as a textbook or a reference book for a one-semester graduate course in statistics, computational biology, engineering, and computer sciences. Applied or theoretical researchers will also find this book beneficial.
Category: Mathematics

Handbook Of Cluster Analysis

Author : Christian Hennig
ISBN : 9781466551893
Genre : Business & Economics
File Size : 60.16 MB
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Handbook of Cluster Analysis provides a comprehensive and unified account of the main research developments in cluster analysis. Written by active, distinguished researchers in this area, the book helps readers make informed choices of the most suitable clustering approach for their problem and make better use of existing cluster analysis tools. The book is organized according to the traditional core approaches to cluster analysis, from the origins to recent developments. After an overview of approaches and a quick journey through the history of cluster analysis, the book focuses on the four major approaches to cluster analysis. These approaches include methods for optimizing an objective function that describes how well data is grouped around centroids, dissimilarity-based methods, mixture models and partitioning models, and clustering methods inspired by nonparametric density estimation. The book also describes additional approaches to cluster analysis, including constrained and semi-supervised clustering, and explores other relevant issues, such as evaluating the quality of a cluster. This handbook is accessible to readers from various disciplines, reflecting the interdisciplinary nature of cluster analysis. For those already experienced with cluster analysis, the book offers a broad and structured overview. For newcomers to the field, it presents an introduction to key issues. For researchers who are temporarily or marginally involved with cluster analysis problems, the book gives enough algorithmic and practical details to facilitate working knowledge of specific clustering areas.
Category: Business & Economics

Markov Chains

Author : Carl Graham
ISBN : 9781118882696
Genre : Mathematics
File Size : 75.69 MB
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Markov Chains: Analytic and Monte Carlo Computations introduces the main notions related to Markov chains and provides explanations on how to characterize, simulate, and recognize them. Starting with basic notions, this book leads progressively to advanced and recent topics in the field, allowing the reader to master the main aspects of the classical theory. This book also features: Numerous exercises with solutions as well as extended case studies. A detailed and rigorous presentation of Markov chains with discrete time and state space. An appendix presenting probabilistic notions that are necessary to the reader, as well as giving more advanced measure-theoretic notions.
Category: Mathematics

Statistical Models

Author : A. C. Davison
ISBN : 9781139437417
Genre : Mathematics
File Size : 82.79 MB
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Models and likelihood are the backbone of modern statistics. This 2003 book gives an integrated development of these topics that blends theory and practice, intended for advanced undergraduate and graduate students, researchers and practitioners. Its breadth is unrivaled, with sections on survival analysis, missing data, Markov chains, Markov random fields, point processes, graphical models, simulation and Markov chain Monte Carlo, estimating functions, asymptotic approximations, local likelihood and spline regressions as well as on more standard topics such as likelihood and linear and generalized linear models. Each chapter contains a wide range of problems and exercises. Practicals in the S language designed to build computing and data analysis skills, and a library of data sets to accompany the book, are available over the Web.
Category: Mathematics